Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BDP_2164Sugar ABC transporter, permease protein. (292 aa)    
Predicted Functional Partners:
BDP_2160
Sugar-binding protein of ABC transporter system.
 
  0.977
BDP_0566
Permease protein of ABC transporter system for sugars.
 
 0.967
BDP_2165
Binding-protein-dependent transport systems inner membrane component.
 
   0.954
BDP_2173
Permease protein of ABC transporter system for sugars.
 
 0.944
BDP_2238
ATP-binding protein of ABC transporter system for sugars; Belongs to the ABC transporter superfamily.
 
 0.920
BDP_0489
Sugar-binding protein of ABC transporter system.
 
  0.917
BDP_2225
Raffinose transport system permease protein.
 
 0.909
BDP_0126
ABC-type sugar transport system, permease component.
 
 0.896
BDP_2161
Solute binding protein of ABC transporter system for sugars.
 
   
 0.840
BDP_0951
ABC transporter sugar permease.
 
   0.790
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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