STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_2165Binding-protein-dependent transport systems inner membrane component. (49 aa)    
Predicted Functional Partners:
BDP_2164
Sugar ABC transporter, permease protein.
 
   0.954
BDP_2161
Solute binding protein of ABC transporter system for sugars.
 
 
 0.900
BDP_2159
Permease protein of ABC transporter system for sugars.
 
   0.862
BDP_1911
Solute-binding protein of ABC transporter system for sugars.
 
   0.774
BDP_2162
Transcriptional regulator, LacI family.
 
     0.765
BDP_0659
Solute-binding protein of ABC transporter system for sugars.
 
   0.763
BDP_0653
Solute-binding protein of ABC transporter system for sugars.
 
   0.732
BDP_0565
Solute-binding protein of ABC transporter system(lactose).
 
   0.706
BDP_0660
Solute-binding protein of ABC transporter system for sugars.
 
   0.653
BDP_2166
Transcriptional regulator, LacI family.
 
     0.651
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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