STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_2227Transcriptional repressor, ROK family. (377 aa)    
Predicted Functional Partners:
ptsG
ptsG PTS system, glucose-specific IIABC component.
  
 
 0.927
BDP_1930
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1(PTS system).
  
 
 0.927
BDP_2225
Raffinose transport system permease protein.
     
 0.785
BDP_2224
Raffinose transport system permease protein.
     
 0.775
BDP_0576
NagC/XylR-type transciptional regulator.
  
     0.772
BDP_1789
ROK family transcriptional regulator.
  
     0.772
BDP_1791
Sugar kinase, ROK family.
  
     0.768
glk
Glk Glucokinase/Xylose repressor.
 
     0.756
BDP_2226
Raffinose-binding protein.
 
  
 0.748
BDP_0425
Transcriptional regulator, ROK family.
  
     0.740
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.