STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_2232Phospholipase/carboxylesterase. (252 aa)    
Predicted Functional Partners:
dcd
Dcd Deoxycytidine triphosphate deaminase; Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate.
       0.675
BDP_0995
Conserved hypothetical protein.
  
     0.640
BDP_0169
Putative lipoprotein.
  
     0.624
BDP_1625
Aminoglycoside phosphotransferase.
  
     0.586
BDP_0886
Conserved hypothetical protein.
  
     0.555
BDP_0356
Conserved hypothetical membrane spanning protein.
  
     0.544
BDP_1331
Narrowly conserved hypothetical protein.
  
 
   0.532
BDP_1208
Hypothetical secreted protein.
  
     0.509
BDP_1589
Chromosome segregation ATPase.
 
     0.503
BDP_0156
Conserved hypothetical protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
  
     0.494
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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