STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_2244ATP-binding protein of ABC transporter system. (267 aa)    
Predicted Functional Partners:
BDP_2245
Permease protein of ABC transporter system.
 
 
 0.983
BDP_2246
Twin-arginine translocation pathway signal.
 
 
 0.963
BDP_1609
Permease protein of ABC transporter system.
 
 
 0.850
gatA-2
GatA Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A; Belongs to the amidase family.
 
   
 0.830
BDP_1610
Solute binding protein of ABC transporter system.
  
 
 0.821
BDP_1485
ABC-type Mn2+/Zn2+ transport systems, permease components.
  
 
 0.786
glnB
Nitrogen regulatory protein PII; Belongs to the P(II) protein family.
    
 
 0.636
BDP_2242
Chloride channel protein.
       0.543
BDP_2247
Acetamidase/Formamidase.
       0.512
BDP_0106
Urea amidolyase related protein.
     
 0.446
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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