Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_2246Twin-arginine translocation pathway signal. (326 aa)    
Predicted Functional Partners:
BDP_2245
Permease protein of ABC transporter system.
 
 
 0.972
BDP_2244
ATP-binding protein of ABC transporter system.
 
 
 0.963
BDP_1609
Permease protein of ABC transporter system.
 
 
 0.829
infA
infA Bacterial Protein Translation Initiation Factor; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
    0.827
fkbP
Peptidyl-prolyl cis-trans isomerase.
   
    0.827
gatA-2
GatA Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A; Belongs to the amidase family.
 
   
 0.716
BDP_1485
ABC-type Mn2+/Zn2+ transport systems, permease components.
  
 
 0.677
glnB
Nitrogen regulatory protein PII; Belongs to the P(II) protein family.
   
 
 0.647
BDP_2247
Acetamidase/Formamidase.
       0.600
BDP_2242
Chloride channel protein.
       0.462
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.