Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_2248Transcriptional regulator, GntR family. (246 aa)    
Predicted Functional Partners:
BDP_2139
Multiple substrate aminotransferase (MsaT)containing domain of GntR family.
  
     0.669
BDP_2247
Acetamidase/Formamidase.
       0.590
lacA-3
LacA Galactoside O-acetyltransferase.
       0.541
BDP_0498
Hypothetical protein.
  
  
 0.528
BDP_2245
Permease protein of ABC transporter system.
 
     0.495
BDP_1318
Transcriptional regulator, AraC family.
 
  
 0.436
BDP_0835
Transcriptional regulator, AraC family.
  
    0.413
BDP_2246
Twin-arginine translocation pathway signal.
       0.402
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.