STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aspC-2AspC Aspartate aminotransferase. (383 aa)    
Predicted Functional Partners:
BDP_0230
Aspartokinase; Belongs to the aspartokinase family.
  
 0.580
BDP_0231
Aspartokinase.
  
 0.580
purF-2
purF Amidophosphoribosyltransferase.
  
 
 0.538
BDP_0309
Aspartate ammonia-lyase.
    
 0.529
BDP_2251
ATPase.
       0.507
lacA-3
LacA Galactoside O-acetyltransferase.
       0.443
BDP_0861
NAD(P)H oxidoreductase.
   
    0.412
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.