Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
aspC-2AspC Aspartate aminotransferase. (383 aa)    
Predicted Functional Partners:
BDP_0230
Aspartokinase; Belongs to the aspartokinase family.
  
 0.591
BDP_0231
Aspartokinase.
  
 0.591
purF-2
purF Amidophosphoribosyltransferase.
  
 
 0.526
BDP_0309
Aspartate ammonia-lyase.
    
 0.521
BDP_2251
ATPase.
       0.507
lacA-3
LacA Galactoside O-acetyltransferase.
       0.443
BDP_1078
Glutamate synthase [NADPH] large subunit.
  
  
 0.426
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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