STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mviNIntegral membrane protein MviN. (1238 aa)    
Predicted Functional Partners:
BDP_2268
Conserved hypothetical secreted protein.
 
     0.881
BDP_2267
Phosphohydrolase (MutT/nudix family protein); Belongs to the Nudix hydrolase family.
       0.822
BDP_1306
Conserved hypothetical membrane spanning protein.
  
     0.692
BDP_1402
Nucleotide pyrophosphatase.
 
     0.653
BDP_1936
Thioredoxin domain-containing protein.
 
     0.635
BDP_1304
Conserved hypothetical membrane spanning protein.
  
     0.634
BDP_1216
DNA polymerase III, delta subunit.
 
  
 0.614
BDP_0041
Cell division protein; Belongs to the SEDS family.
 
   
 0.595
BDP_0044
Conserved hypothetical protein.
  
   
 0.578
BDP_2261
Protein-disulfide isomerase.
  
     0.573
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.