STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_4001Glycosyl transferase, family 2. (313 aa)    
Predicted Functional Partners:
BDP_1865
Conserved hypothetical protein.
       0.803
BDP_1866
Polysaccharide pyruvyl transferase.
  
    0.699
BDP_1864
Rhamnosyltransferase.
 
  
 0.692
sdr
Short chain dehydrogenase.
  
 
 0.683
menD
2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase.
       0.571
BDP_2030
Glycosyl transferase family 2.
 
     0.498
cspD-2
Undecaprenyl-phosphate sugar phosphotransferase CspD.
 
  
 0.468
rfbP
RfbP Undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.467
wzx-2
Flippase.
  
  
 0.458
rmlA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
 
  
 0.422
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.