STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_4003Hypothetical protein. (132 aa)    
Predicted Functional Partners:
rmlB
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.701
BDP_2033
Nucleotide sugar dehydrogenase.
  
  
 0.701
BDP_0246
UDP-glactopyranose mutase.
  
  
 0.692
cspD
Undecaprenyl-phosphate galactose phosphotransferase CspD.
  
  
 0.648
BDP_1948
Hypothetical protein.
       0.629
BDP_1947
Hypothetical protein.
       0.622
BDP_4002
Hypothetical protein.
       0.588
BDP_1946
ATP-binding protein of ABC transporter system.
       0.562
BDP_1949
Two-component response regulator, LuxR family.
       0.510
wzx
Wzx flippase.
  
  
 0.496
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.