A0A0D9YHL9 protein (Oryza glumipatula) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D9YHL9

Uncharacterized protein. (741 aa)

Predicted Functional Partners:

A0A0E0AH32

0.707

A0A0D9YG74

0.706

A0A0E0B5T4

0.706

A0A0E0BRB9

0.706

A0A0E0ALD6

0.645

A0A0D9YN85

0.631

A0A0D9ZLR4

0.629

A0A0E0B0F1

0.629

A0A0D9Y254

0.627

A0A0D9YCU7

0.627

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9Y254	A0A0D9YHL9	PfkB domain-containing protein.	Uncharacterized protein.	0.627
A0A0D9Y254	A0A0D9ZLR4	PfkB domain-containing protein.	Uncharacterized protein.	0.748
A0A0D9Y254	A0A0E0AH32	PfkB domain-containing protein.	SurE domain-containing protein.	0.846
A0A0D9Y254	A0A0E0B0F1	PfkB domain-containing protein.	SnoaL-like domain-containing protein.	0.748
A0A0D9YCU7	A0A0D9YHL9	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	Uncharacterized protein.	0.627
A0A0D9YCU7	A0A0D9ZLR4	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	Uncharacterized protein.	0.564
A0A0D9YCU7	A0A0E0AH32	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	SurE domain-containing protein.	0.581
A0A0D9YCU7	A0A0E0B0F1	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	SnoaL-like domain-containing protein.	0.564
A0A0D9YG74	A0A0D9YHL9	SAP domain-containing protein.	Uncharacterized protein.	0.706
A0A0D9YG74	A0A0E0ALD6	SAP domain-containing protein.	Uncharacterized protein.	0.410
A0A0D9YG74	A0A0E0B5T4	SAP domain-containing protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.892
A0A0D9YHL9	A0A0D9Y254	Uncharacterized protein.	PfkB domain-containing protein.	0.627
A0A0D9YHL9	A0A0D9YCU7	Uncharacterized protein.	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	0.627
A0A0D9YHL9	A0A0D9YG74	Uncharacterized protein.	SAP domain-containing protein.	0.706
A0A0D9YHL9	A0A0D9YN85	Uncharacterized protein.	HD domain-containing protein.	0.631
A0A0D9YHL9	A0A0D9ZLR4	Uncharacterized protein.	Uncharacterized protein.	0.629
A0A0D9YHL9	A0A0E0AH32	Uncharacterized protein.	SurE domain-containing protein.	0.707
A0A0D9YHL9	A0A0E0ALD6	Uncharacterized protein.	Uncharacterized protein.	0.645
A0A0D9YHL9	A0A0E0B0F1	Uncharacterized protein.	SnoaL-like domain-containing protein.	0.629
A0A0D9YHL9	A0A0E0B5T4	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.706