STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D9YLL5PPC domain-containing protein. (389 aa)    
Predicted Functional Partners:
A0A0E0BG20
Uncharacterized protein.
    
 0.549
A0A0D9YC61
ZF-HD dimerization-type domain-containing protein.
  
 
  0.543
A0A0D9Z0R3
ERCC4 domain-containing protein.
    
  0.538
A0A0E0BL76
Uncharacterized protein.
  
 
   0.514
A0A0D9YYL9
PB1 domain-containing protein.
  
     0.506
A0A0E0BL80
Uncharacterized protein.
  
 
   0.486
A0A0D9YM67
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
 
 0.480
A0A0E0ACE1
PX domain-containing protein.
  
 
   0.476
A0A0E0B4M6
BHLH domain-containing protein.
  
  0.474
A0A0E0AR61
Uncharacterized protein.
  
 
  0.471
Your Current Organism:
Oryza glumipatula
NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.
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