A0A0D9Z2I7 protein (Oryza glumipatula) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D9Z2I7

Alba domain-containing protein. (336 aa)

Predicted Functional Partners:

A0A0E0A0I9

0.955

A0A0E0BPQ5

0.955

A0A0E0BM52

0.937

A0A0E0AN74

0.809

A0A0E0B7D4

0.809

A0A0E0BSD3

0.809

A0A0D9YLA8

0.623

A0A0E0AG19

0.564

A0A0D9ZRZ6

0.558

A0A0E0BAX8

0.555

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9YLA8	A0A0D9Z2I7	Uncharacterized protein; Belongs to the NOB1 family.	Alba domain-containing protein.	0.623
A0A0D9YLA8	A0A0D9ZRZ6	Uncharacterized protein; Belongs to the NOB1 family.	S4 RNA-binding domain-containing protein.	0.987
A0A0D9YLA8	A0A0E0A0I9	Uncharacterized protein; Belongs to the NOB1 family.	POP4 domain-containing protein.	0.487
A0A0D9YLA8	A0A0E0AG19	Uncharacterized protein; Belongs to the NOB1 family.	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.999
A0A0D9YLA8	A0A0E0AN74	Uncharacterized protein; Belongs to the NOB1 family.	Ribosomal_L7Ae domain-containing protein.	0.844
A0A0D9YLA8	A0A0E0B7D4	Uncharacterized protein; Belongs to the NOB1 family.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.844
A0A0D9YLA8	A0A0E0BPQ5	Uncharacterized protein; Belongs to the NOB1 family.	Chal_sti_synt_N domain-containing protein.	0.973
A0A0D9YLA8	A0A0E0BSD3	Uncharacterized protein; Belongs to the NOB1 family.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.844
A0A0D9Z2I7	A0A0D9YLA8	Alba domain-containing protein.	Uncharacterized protein; Belongs to the NOB1 family.	0.623
A0A0D9Z2I7	A0A0D9ZRZ6	Alba domain-containing protein.	S4 RNA-binding domain-containing protein.	0.558
A0A0D9Z2I7	A0A0E0A0I9	Alba domain-containing protein.	POP4 domain-containing protein.	0.955
A0A0D9Z2I7	A0A0E0AG19	Alba domain-containing protein.	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.564
A0A0D9Z2I7	A0A0E0AN74	Alba domain-containing protein.	Ribosomal_L7Ae domain-containing protein.	0.809
A0A0D9Z2I7	A0A0E0B7D4	Alba domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.809
A0A0D9Z2I7	A0A0E0BAX8	Alba domain-containing protein.	Uncharacterized protein.	0.555
A0A0D9Z2I7	A0A0E0BM52	Alba domain-containing protein.	Uncharacterized protein.	0.937
A0A0D9Z2I7	A0A0E0BPQ5	Alba domain-containing protein.	Chal_sti_synt_N domain-containing protein.	0.955
A0A0D9Z2I7	A0A0E0BSD3	Alba domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.809
A0A0D9ZRZ6	A0A0D9YLA8	S4 RNA-binding domain-containing protein.	Uncharacterized protein; Belongs to the NOB1 family.	0.987
A0A0D9ZRZ6	A0A0D9Z2I7	S4 RNA-binding domain-containing protein.	Alba domain-containing protein.	0.558