STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D9ZDN1DYW_deaminase domain-containing protein. (296 aa)    
Predicted Functional Partners:
A0A0E0BDN0
Uncharacterized protein.
  
   
 0.517
A0A0D9Y8W4
DYW_deaminase domain-containing protein.
  
     0.505
A0A0D9YXT7
RRM domain-containing protein.
    
 
 0.496
A0A0E0AQM8
Uncharacterized protein.
    
 
 0.486
A0A0E0ADD7
Uncharacterized protein.
  
     0.458
A0A0D9YGF6
Uncharacterized protein.
    
 
 0.455
A0A0E0AA25
Uncharacterized protein.
  
     0.442
A0A0E0BGQ8
Uncharacterized protein.
    
 
 0.432
A0A0D9ZUG4
Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.
   
 0.426
A0A0E0BFK7
Uncharacterized protein.
  
     0.425
Your Current Organism:
Oryza glumipatula
NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.
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