STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D9ZFD4CHHC U11-48K-type domain-containing protein. (464 aa)    
Predicted Functional Partners:
A0A0D9ZIY3
tRNA (adenine(58)-N(1))-methyltransferase.
   
    0.779
A0A0E0A423
Uncharacterized protein.
   
    0.767
A0A0D9YTM8
UPF0020 domain-containing protein.
   
  
 0.685
A0A0E0AP55
Uncharacterized protein.
   
    0.667
A0A0D9Y3N7
RNA helicase.
   
    0.646
A0A0E0AE29
Uncharacterized protein.
   
  
 0.621
A0A0E0AKJ3
SAM_MT_TRM5_TYW2 domain-containing protein.
   
  
 0.546
A0A0D9YA46
Uncharacterized protein.
   
  
 0.537
A0A0E0A7A2
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.
   
  
 0.537
A0A0D9YYA0
Ubiquitin-like domain-containing protein.
   
  
 0.523
Your Current Organism:
Oryza glumipatula
NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.
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