STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D9ZGQ1Uncharacterized protein. (261 aa)    
Predicted Functional Partners:
A0A0D9ZLW7
Ipi1_N domain-containing protein.
    
 0.577
A0A0D9ZC10
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.526
A0A0D9Z7E5
Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
   
 0.442
A0A0E0AJ18
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.442
A0A0E0AKE3
Thioredoxin domain-containing protein.
    
 0.441
A0A0D9YEH9
Uncharacterized protein.
   
 0.439
A0A0D9ZWY9
Uncharacterized protein.
   
 0.439
A0A0E0AIM8
WD_REPEATS_REGION domain-containing protein.
   
 0.439
A0A0E0B4D0
WD_REPEATS_REGION domain-containing protein.
   
 0.439
A0A0E0A7S1
Uncharacterized protein.
    
 0.432
Your Current Organism:
Oryza glumipatula
NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.
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