A0A0D9ZHY3 protein (Oryza glumipatula) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D9ZHY3

Uncharacterized protein. (201 aa)

Predicted Functional Partners:

A0A0D9ZUY2

0.931

A0A0E0ATS1

0.931

A0A0E0ADH8

0.873

A0A0D9Z507

0.868

A0A0D9Z5D1

0.784

A0A0D9ZX60

0.784

A0A0D9ZZ94

0.784

A0A0E0AHZ1

0.784

A0A0D9YRP1

0.750

A0A0E0ARJ9

0.744

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9YRP1	A0A0D9ZHY3	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	Uncharacterized protein.	0.750
A0A0D9YRP1	A0A0D9ZUY2	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.426
A0A0D9YRP1	A0A0E0ADH8	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	Uncharacterized protein.	0.780
A0A0D9YRP1	A0A0E0ARJ9	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	Pep3_Vps18 domain-containing protein.	0.894
A0A0D9YRP1	A0A0E0ATS1	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.426
A0A0D9Z507	A0A0D9Z5D1	VPS9 domain-containing protein.	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	0.642
A0A0D9Z507	A0A0D9ZHY3	VPS9 domain-containing protein.	Uncharacterized protein.	0.868
A0A0D9Z507	A0A0D9ZX60	VPS9 domain-containing protein.	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	0.523
A0A0D9Z507	A0A0D9ZZ94	VPS9 domain-containing protein.	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	0.523
A0A0D9Z507	A0A0E0ADH8	VPS9 domain-containing protein.	Uncharacterized protein.	0.918
A0A0D9Z507	A0A0E0AHZ1	VPS9 domain-containing protein.	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	0.523
A0A0D9Z5D1	A0A0D9Z507	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	VPS9 domain-containing protein.	0.642
A0A0D9Z5D1	A0A0D9ZHY3	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	Uncharacterized protein.	0.784
A0A0D9Z5D1	A0A0E0ADH8	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	Uncharacterized protein.	0.868
A0A0D9ZHY3	A0A0D9YRP1	Uncharacterized protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.750
A0A0D9ZHY3	A0A0D9Z507	Uncharacterized protein.	VPS9 domain-containing protein.	0.868
A0A0D9ZHY3	A0A0D9Z5D1	Uncharacterized protein.	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	0.784
A0A0D9ZHY3	A0A0D9ZUY2	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.931
A0A0D9ZHY3	A0A0D9ZX60	Uncharacterized protein.	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	0.784
A0A0D9ZHY3	A0A0D9ZZ94	Uncharacterized protein.	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	0.784