STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D9ZQY1Uncharacterized protein. (594 aa)    
Predicted Functional Partners:
A0A0D9YX75
Aminotran_1_2 domain-containing protein.
     
 0.930
A0A0D9YF95
Aspartate aminotransferase.
     
 0.929
A0A0D9YPS2
Aspartate aminotransferase.
     
 0.929
A0A0D9YZP3
Aspartate aminotransferase.
     
 0.929
A0A0E0AAQ0
Aspartate aminotransferase.
     
 0.929
A0A0D9YG01
Uncharacterized protein.
  
 
 
0.892
A0A0D9YG04
Tyrosinase_Cu-bd domain-containing protein.
  
  
 
0.888
A0A0E0AAM3
Prephenate/arogenate dehydrogenase domain-containing protein.
     
 0.886
A0A0E0AE76
Prephenate/arogenate dehydrogenase domain-containing protein.
     
 0.886
A0A0D9YLC4
RPOL4c domain-containing protein.
    
 0.880
Your Current Organism:
Oryza glumipatula
NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.
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