A0A0D9ZSQ2 protein (Oryza glumipatula) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D9ZSQ2

Uncharacterized protein. (1057 aa)

Predicted Functional Partners:

A0A0D9YBL0

0.836

A0A0E0ABI9

0.836

A0A0D9ZDW2

0.782

A0A0E0A2Q6

0.781

A0A0E0AFR9

0.781

A0A0E0B4H0

0.781

A0A0E0AYY8

0.768

A0A0E0AJ17

0.765

A0A0D9YYK7

0.744

A0A0D9ZKK3

0.725

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9YBL0	A0A0D9ZSQ2	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Uncharacterized protein.	0.836
A0A0D9YBL0	A0A0E0ABI9	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.871
A0A0D9YYK7	A0A0D9ZDW2	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Uncharacterized protein.	0.989
A0A0D9YYK7	A0A0D9ZKK3	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Uncharacterized protein.	0.867
A0A0D9YYK7	A0A0D9ZSQ2	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Uncharacterized protein.	0.744
A0A0D9YYK7	A0A0E0A2Q6	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Uncharacterized protein.	0.989
A0A0D9YYK7	A0A0E0AFR9	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Uncharacterized protein.	0.993
A0A0D9YYK7	A0A0E0AJ17	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Uncharacterized protein.	0.983
A0A0D9YYK7	A0A0E0AYY8	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Uncharacterized protein.	0.982
A0A0D9YYK7	A0A0E0B4H0	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Uncharacterized protein.	0.994
A0A0D9ZDW2	A0A0D9YYK7	Uncharacterized protein.	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	0.989
A0A0D9ZDW2	A0A0D9ZKK3	Uncharacterized protein.	Uncharacterized protein.	0.995
A0A0D9ZDW2	A0A0D9ZSQ2	Uncharacterized protein.	Uncharacterized protein.	0.782
A0A0D9ZDW2	A0A0E0A2Q6	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A0D9ZDW2	A0A0E0AFR9	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A0D9ZDW2	A0A0E0AJ17	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A0D9ZDW2	A0A0E0AYY8	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A0D9ZDW2	A0A0E0B4H0	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A0D9ZKK3	A0A0D9YYK7	Uncharacterized protein.	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	0.867
A0A0D9ZKK3	A0A0D9ZDW2	Uncharacterized protein.	Uncharacterized protein.	0.995