A0A0E0A886 protein (Oryza glumipatula) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0E0A886

Phytocyanin domain-containing protein. (223 aa)

Predicted Functional Partners:

A0A0D9YUG0

0.726

A0A0D9YDA9

0.651

A0A0E0A2I4

0.651

A0A0E0B6S3

0.637

A0A0D9ZGD6

0.636

A0A0E0AEL7

0.619

A0A0D9YQS4

0.609

A0A0D9YZT3

0.595

A0A0D9Z1P6

0.595

A0A0D9Z809

0.588

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9YDA9	A0A0E0A886	Uncharacterized protein.	Phytocyanin domain-containing protein.	0.651
A0A0D9YDA9	A0A0E0B6S3	Uncharacterized protein.	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	0.990
A0A0D9YQS4	A0A0D9Z809	BURP domain-containing protein.	Uncharacterized protein.	0.436
A0A0D9YQS4	A0A0E0A886	BURP domain-containing protein.	Phytocyanin domain-containing protein.	0.609
A0A0D9YUG0	A0A0E0A886	Uncharacterized protein.	Phytocyanin domain-containing protein.	0.726
A0A0D9YZT3	A0A0D9Z1P6	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	NAC domain-containing protein.	0.909
A0A0D9YZT3	A0A0D9ZGD6	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.999
A0A0D9YZT3	A0A0E0A886	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Phytocyanin domain-containing protein.	0.595
A0A0D9YZT3	A0A0E0AEL7	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	NAC domain-containing protein.	0.909
A0A0D9Z1P6	A0A0D9YZT3	NAC domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.909
A0A0D9Z1P6	A0A0D9Z809	NAC domain-containing protein.	Uncharacterized protein.	0.515
A0A0D9Z1P6	A0A0D9ZGD6	NAC domain-containing protein.	Uncharacterized protein.	0.950
A0A0D9Z1P6	A0A0E0A886	NAC domain-containing protein.	Phytocyanin domain-containing protein.	0.595
A0A0D9Z809	A0A0D9YQS4	Uncharacterized protein.	BURP domain-containing protein.	0.436
A0A0D9Z809	A0A0D9Z1P6	Uncharacterized protein.	NAC domain-containing protein.	0.515
A0A0D9Z809	A0A0E0A886	Uncharacterized protein.	Phytocyanin domain-containing protein.	0.588
A0A0D9Z809	A0A0E0AEL7	Uncharacterized protein.	NAC domain-containing protein.	0.481
A0A0D9ZGD6	A0A0D9YZT3	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
A0A0D9ZGD6	A0A0D9Z1P6	Uncharacterized protein.	NAC domain-containing protein.	0.950
A0A0D9ZGD6	A0A0E0A886	Uncharacterized protein.	Phytocyanin domain-containing protein.	0.636