A0A0E0BIZ5 protein (Oryza glumipatula) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0E0BIZ5

Uncharacterized protein. (98 aa)

Predicted Functional Partners:

A0A0D9ZKR1

0.870

A0A0E0ATV7

0.865

A0A0D9YY95

0.845

A0A0E0BQT7

0.837

A0A0D9ZAR1

0.767

A0A0E0BHP2

0.767

A0A0D9ZEN2

0.660

A0A0E0AGZ6

0.660

A0A0E0ALK1

0.660

A0A0E0AZ49

0.660

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9YY95	A0A0D9ZAR1	Uncharacterized protein.	Sec3-PIP2_bind domain-containing protein.	0.994
A0A0D9YY95	A0A0D9ZEN2	Uncharacterized protein.	Exo84_C domain-containing protein.	0.985
A0A0D9YY95	A0A0D9ZKR1	Uncharacterized protein.	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.999
A0A0D9YY95	A0A0E0AGZ6	Uncharacterized protein.	Exo84_C domain-containing protein.	0.985
A0A0D9YY95	A0A0E0ALK1	Uncharacterized protein.	Exo84_C domain-containing protein.	0.985
A0A0D9YY95	A0A0E0ATV7	Uncharacterized protein.	Sec8_exocyst domain-containing protein.	0.999
A0A0D9YY95	A0A0E0AZ49	Uncharacterized protein.	Uncharacterized protein.	0.984
A0A0D9YY95	A0A0E0BHP2	Uncharacterized protein.	Sec3-PIP2_bind domain-containing protein.	0.994
A0A0D9YY95	A0A0E0BIZ5	Uncharacterized protein.	Uncharacterized protein.	0.845
A0A0D9YY95	A0A0E0BQT7	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A0D9ZAR1	A0A0D9YY95	Sec3-PIP2_bind domain-containing protein.	Uncharacterized protein.	0.994
A0A0D9ZAR1	A0A0D9ZEN2	Sec3-PIP2_bind domain-containing protein.	Exo84_C domain-containing protein.	0.964
A0A0D9ZAR1	A0A0D9ZKR1	Sec3-PIP2_bind domain-containing protein.	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.995
A0A0D9ZAR1	A0A0E0AGZ6	Sec3-PIP2_bind domain-containing protein.	Exo84_C domain-containing protein.	0.964
A0A0D9ZAR1	A0A0E0ALK1	Sec3-PIP2_bind domain-containing protein.	Exo84_C domain-containing protein.	0.965
A0A0D9ZAR1	A0A0E0ATV7	Sec3-PIP2_bind domain-containing protein.	Sec8_exocyst domain-containing protein.	0.993
A0A0D9ZAR1	A0A0E0AZ49	Sec3-PIP2_bind domain-containing protein.	Uncharacterized protein.	0.964
A0A0D9ZAR1	A0A0E0BIZ5	Sec3-PIP2_bind domain-containing protein.	Uncharacterized protein.	0.767
A0A0D9ZAR1	A0A0E0BQT7	Sec3-PIP2_bind domain-containing protein.	Uncharacterized protein.	0.989
A0A0D9ZEN2	A0A0D9YY95	Exo84_C domain-containing protein.	Uncharacterized protein.	0.985