A0A0E0BJI2 protein (Oryza glumipatula) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0E0BJI2

Uncharacterized protein. (327 aa)

Predicted Functional Partners:

A0A0E0ABI9

0.949

A0A0D9YBL0

0.942

A0A0E0ADE5

0.912

A0A0E0B5U2

0.912

A0A0D9Y208

0.800

A0A0D9ZQF1

0.800

A0A0D9Y8X5

0.707

A0A0D9YPN1

0.707

A0A0D9Z2Q9

0.707

A0A0D9ZE57

0.707

Your Current Organism:

Oryza glumipatula

NCBI taxonomy Id: 40148
Other names: O. glumipatula, Oryza glumaepatula, Oryza glumipatula Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D9Y208	A0A0D9Y8X5	Uncharacterized protein.	Peptidase S59 domain-containing protein.	0.537
A0A0D9Y208	A0A0D9YBL0	Uncharacterized protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.841
A0A0D9Y208	A0A0D9YPN1	Uncharacterized protein.	Uncharacterized protein.	0.537
A0A0D9Y208	A0A0D9Z2Q9	Uncharacterized protein.	Peptidase S59 domain-containing protein.	0.537
A0A0D9Y208	A0A0D9ZE57	Uncharacterized protein.	Uncharacterized protein.	0.537
A0A0D9Y208	A0A0D9ZQF1	Uncharacterized protein.	Uncharacterized protein.	0.698
A0A0D9Y208	A0A0E0ABI9	Uncharacterized protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.841
A0A0D9Y208	A0A0E0ADE5	Uncharacterized protein.	C2H2-type domain-containing protein.	0.951
A0A0D9Y208	A0A0E0B5U2	Uncharacterized protein.	Uncharacterized protein.	0.951
A0A0D9Y208	A0A0E0BJI2	Uncharacterized protein.	Uncharacterized protein.	0.800
A0A0D9Y8X5	A0A0D9Y208	Peptidase S59 domain-containing protein.	Uncharacterized protein.	0.537
A0A0D9Y8X5	A0A0D9YBL0	Peptidase S59 domain-containing protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.794
A0A0D9Y8X5	A0A0D9Z2Q9	Peptidase S59 domain-containing protein.	Peptidase S59 domain-containing protein.	0.939
A0A0D9Y8X5	A0A0D9ZQF1	Peptidase S59 domain-containing protein.	Uncharacterized protein.	0.949
A0A0D9Y8X5	A0A0E0ABI9	Peptidase S59 domain-containing protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.794
A0A0D9Y8X5	A0A0E0ADE5	Peptidase S59 domain-containing protein.	C2H2-type domain-containing protein.	0.935
A0A0D9Y8X5	A0A0E0B5U2	Peptidase S59 domain-containing protein.	Uncharacterized protein.	0.935
A0A0D9Y8X5	A0A0E0BJI2	Peptidase S59 domain-containing protein.	Uncharacterized protein.	0.707
A0A0D9YBL0	A0A0D9Y208	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Uncharacterized protein.	0.841
A0A0D9YBL0	A0A0D9Y8X5	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Peptidase S59 domain-containing protein.	0.794