STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0C3B6Uncharacterized protein. (108 aa)    
Predicted Functional Partners:
A0A0E0CKA2
Uncharacterized protein.
    
 
 0.713
A0A0E0EUH9
Uncharacterized protein.
    
 
 0.713
A0A0E0E4F5
WD_REPEATS_REGION domain-containing protein.
    
 0.551
A0A0E0EF70
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
  0.529
A0A0E0ESG8
Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.
    
  0.474
A0A0E0EDC6
Uncharacterized protein.
    
 0.464
A0A0E0CQG1
Uncharacterized protein.
    
 0.453
A0A0E0C164
Ubiquitin-like domain-containing protein.
    
 0.451
A0A0E0C2T0
TAF domain-containing protein.
    
 0.449
A0A0E0E025
Uncharacterized protein.
    
 0.445
Your Current Organism:
Oryza meridionalis
NCBI taxonomy Id: 40149
Other names: Australian wild rice, IRRI 101147, O. meridionalis
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