STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0CD63Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (491 aa)    
Predicted Functional Partners:
A0A0E0CF17
Uncharacterized protein; Belongs to the cyclin family.
    
 0.892
A0A0E0FC93
Uncharacterized protein; Belongs to the cyclin family.
    
 0.859
A0A0E0EEM1
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.734
A0A0E0EUQ3
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 0.705
A0A0E0C411
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
  
 
0.698
A0A0E0EPD7
RPOLD domain-containing protein.
   
 0.691
A0A0E0CL61
Protein kinase domain-containing protein.
    
 0.679
A0A0E0DV67
CPSF_A domain-containing protein.
    
 
 0.647
A0A0E0ELH1
Uncharacterized protein.
    
 0.639
A0A0E0FBU2
Uncharacterized protein.
    
 0.639
Your Current Organism:
Oryza meridionalis
NCBI taxonomy Id: 40149
Other names: Australian wild rice, IRRI 101147, O. meridionalis
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