STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0CDH7Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (227 aa)    
Predicted Functional Partners:
A0A0E0CGW9
MI domain-containing protein.
   
 0.990
A0A0E0CNB6
MI domain-containing protein.
   
 0.990
A0A0E0E2E1
MIF4G domain-containing protein.
   
 0.990
A0A0E0CV47
Uncharacterized protein.
    
 0.957
A0A0E0CYD1
Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.
     
0.933
A0A0E0E3B3
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 0.929
A0A0E0CYS7
Uncharacterized protein.
    
 0.917
A0A0E0DFV4
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 0.917
A0A0E0EK57
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 0.917
A0A0E0EPI0
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 0.917
Your Current Organism:
Oryza meridionalis
NCBI taxonomy Id: 40149
Other names: Australian wild rice, IRRI 101147, O. meridionalis
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