A0A0E0CHF0 protein (Oryza meridionalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0E0CHF0

WD_REPEATS_REGION domain-containing protein. (342 aa)

Predicted Functional Partners:

A0A0E0E3J9

0.919

A0A0E0EYD1

0.622

A0A0E0C564

0.599

A0A0E0D2U8

0.599

A0A0E0DFA7

0.594

A0A0E0CRA0

0.592

A0A0E0DZP5

0.586

A0A0E0CFK9

0.541

A0A0E0CI30

0.541

A0A0E0CI32

0.541

Your Current Organism:

Oryza meridionalis

NCBI taxonomy Id: 40149
Other names: Australian wild rice, IRRI 101147, O. meridionalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0C564	A0A0E0CFK9	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.800
A0A0E0C564	A0A0E0CHF0	Uncharacterized protein; Belongs to the DEAD box helicase family.	WD_REPEATS_REGION domain-containing protein.	0.599
A0A0E0C564	A0A0E0CI30	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.796
A0A0E0C564	A0A0E0CI32	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.810
A0A0E0C564	A0A0E0E3J9	Uncharacterized protein; Belongs to the DEAD box helicase family.	WD_REPEATS_REGION domain-containing protein.	0.599
A0A0E0CFK9	A0A0E0C564	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.800
A0A0E0CFK9	A0A0E0CHF0	Uncharacterized protein; Belongs to the DEAD box helicase family.	WD_REPEATS_REGION domain-containing protein.	0.541
A0A0E0CFK9	A0A0E0CI32	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.571
A0A0E0CFK9	A0A0E0D2U8	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.800
A0A0E0CFK9	A0A0E0E3J9	Uncharacterized protein; Belongs to the DEAD box helicase family.	WD_REPEATS_REGION domain-containing protein.	0.541
A0A0E0CHF0	A0A0E0C564	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.599
A0A0E0CHF0	A0A0E0CFK9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.541
A0A0E0CHF0	A0A0E0CI30	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.541
A0A0E0CHF0	A0A0E0CI32	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.541
A0A0E0CHF0	A0A0E0CRA0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.592
A0A0E0CHF0	A0A0E0D2U8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.599
A0A0E0CHF0	A0A0E0DFA7	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.594
A0A0E0CHF0	A0A0E0DZP5	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.586
A0A0E0CHF0	A0A0E0E3J9	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.919
A0A0E0CHF0	A0A0E0EYD1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.622