STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0CIP3Uncharacterized protein. (499 aa)    
Predicted Functional Partners:
A0A0E0EHN6
Uncharacterized protein; Belongs to the actin family.
   
 0.876
A0A0E0E861
RuvB-like helicase; Belongs to the RuvB family.
    
 0.871
A0A0E0EKH6
BSD domain-containing protein.
    
 0.855
A0A0E0CET6
Uncharacterized protein.
    
 0.848
A0A0E0DBX3
YL1_C domain-containing protein.
    
 0.786
A0A0E0D0L5
Uncharacterized protein.
    
 0.780
A0A0E0DFZ7
VWFA domain-containing protein.
    
 0.771
A0A0E0E4I9
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.
    
 0.759
A0A0E0EPT7
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.
    
 0.759
A0A0E0CVK5
Histone H2A; Belongs to the histone H2A family.
   
 0.750
Your Current Organism:
Oryza meridionalis
NCBI taxonomy Id: 40149
Other names: Australian wild rice, IRRI 101147, O. meridionalis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.