A0A0E0CTD0 protein (Oryza meridionalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0E0CTD0

Uncharacterized protein. (798 aa)

Predicted Functional Partners:

A0A0E0C649

0.695

A0A0E0D0A9

0.676

A0A0E0D3J6

0.660

A0A0E0DMI6

0.636

A0A0E0CTE8

0.634

A0A0E0EHE3

0.624

A0A0E0EFA2

0.618

A0A0E0EM34

0.618

PURA-2

0.617

A0A0E0E5W3

0.617

Your Current Organism:

Oryza meridionalis

NCBI taxonomy Id: 40149
Other names: Australian wild rice, IRRI 101147, O. meridionalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0E0C649	A0A0E0CTD0	A0A0E0C649	A0A0E0CTD0	Sde2_N_Ubi domain-containing protein.	Uncharacterized protein.	0.695
A0A0E0C649	A0A0E0DMI6	A0A0E0C649	A0A0E0DMI6	Sde2_N_Ubi domain-containing protein.	MPN domain-containing protein.	0.956
A0A0E0C649	A0A0E0E5W3	A0A0E0C649	A0A0E0E5W3	Sde2_N_Ubi domain-containing protein.	W2 domain-containing protein.	0.806
A0A0E0C649	A0A0E0EHE3	A0A0E0C649	A0A0E0EHE3	Sde2_N_Ubi domain-containing protein.	Slu7 domain-containing protein.	0.979
A0A0E0CTD0	A0A0E0C649	A0A0E0CTD0	A0A0E0C649	Uncharacterized protein.	Sde2_N_Ubi domain-containing protein.	0.695
A0A0E0CTD0	A0A0E0CTE8	A0A0E0CTD0	A0A0E0CTE8	Uncharacterized protein.	PSP domain-containing protein.	0.634
A0A0E0CTD0	A0A0E0D0A9	A0A0E0CTD0	A0A0E0D0A9	Uncharacterized protein.	Uncharacterized protein.	0.676
A0A0E0CTD0	A0A0E0D3J6	A0A0E0CTD0	A0A0E0D3J6	Uncharacterized protein.	Uncharacterized protein.	0.660
A0A0E0CTD0	A0A0E0DMI6	A0A0E0CTD0	A0A0E0DMI6	Uncharacterized protein.	MPN domain-containing protein.	0.636
A0A0E0CTD0	A0A0E0E5W3	A0A0E0CTD0	A0A0E0E5W3	Uncharacterized protein.	W2 domain-containing protein.	0.617
A0A0E0CTD0	A0A0E0EFA2	A0A0E0CTD0	A0A0E0EFA2	Uncharacterized protein.	Uncharacterized protein.	0.618
A0A0E0CTD0	A0A0E0EHE3	A0A0E0CTD0	A0A0E0EHE3	Uncharacterized protein.	Slu7 domain-containing protein.	0.624
A0A0E0CTD0	A0A0E0EM34	A0A0E0CTD0	A0A0E0EM34	Uncharacterized protein.	Splicing factor subunit; Belongs to the SF3B5 family.	0.618
A0A0E0CTD0	PURA-2	A0A0E0CTD0	A0A0E0D501	Uncharacterized protein.	Adenylosuccinate synthetase, chloroplastic; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP. Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the adenylosuccinate synthetase family.	0.617
A0A0E0CTE8	A0A0E0CTD0	A0A0E0CTE8	A0A0E0CTD0	PSP domain-containing protein.	Uncharacterized protein.	0.634
A0A0E0CTE8	A0A0E0DMI6	A0A0E0CTE8	A0A0E0DMI6	PSP domain-containing protein.	MPN domain-containing protein.	0.981
A0A0E0CTE8	A0A0E0EHE3	A0A0E0CTE8	A0A0E0EHE3	PSP domain-containing protein.	Slu7 domain-containing protein.	0.977
A0A0E0CTE8	A0A0E0EM34	A0A0E0CTE8	A0A0E0EM34	PSP domain-containing protein.	Splicing factor subunit; Belongs to the SF3B5 family.	0.997
A0A0E0D0A9	A0A0E0CTD0	A0A0E0D0A9	A0A0E0CTD0	Uncharacterized protein.	Uncharacterized protein.	0.676
A0A0E0D0A9	A0A0E0D3J6	A0A0E0D0A9	A0A0E0D3J6	Uncharacterized protein.	Uncharacterized protein.	0.999