A0A0E0D9Y4 protein (Oryza meridionalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0E0D9Y4

Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (341 aa)

Predicted Functional Partners:

A0A0E0EN49

0.950

A0A0E0DFF2

0.937

A0A0E0EEC8

0.931

A0A0E0E058

0.929

A0A0E0ECC2

0.922

A0A0E0CDQ1

0.914

A0A0E0EPZ0

0.914

A0A0E0E6U5

0.913

A0A0E0E7J3

0.907

A0A0E0C3S4

0.902

Your Current Organism:

Oryza meridionalis

NCBI taxonomy Id: 40149
Other names: Australian wild rice, IRRI 101147, O. meridionalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0C3S4	A0A0E0CDQ1	Uncharacterized protein.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.920
A0A0E0C3S4	A0A0E0D9Y4	Uncharacterized protein.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.902
A0A0E0C3S4	A0A0E0DFF2	Uncharacterized protein.	Malate synthase; Belongs to the malate synthase family.	0.924
A0A0E0C3S4	A0A0E0E6U5	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.922
A0A0E0C3S4	A0A0E0E7J3	Uncharacterized protein.	FMN hydroxy acid dehydrogenase domain-containing protein.	0.868
A0A0E0C3S4	A0A0E0ECC2	Uncharacterized protein.	Isocitrate lyase.	0.927
A0A0E0C3S4	A0A0E0EEC8	Uncharacterized protein.	FMN hydroxy acid dehydrogenase domain-containing protein.	0.919
A0A0E0C3S4	A0A0E0EN49	Uncharacterized protein.	Aminotran_5 domain-containing protein.	0.919
A0A0E0CDQ1	A0A0E0C3S4	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein.	0.920
A0A0E0CDQ1	A0A0E0D9Y4	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.914
A0A0E0CDQ1	A0A0E0DFF2	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Malate synthase; Belongs to the malate synthase family.	0.950
A0A0E0CDQ1	A0A0E0E058	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein.	0.929
A0A0E0CDQ1	A0A0E0E6U5	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Aminotran_1_2 domain-containing protein.	0.956
A0A0E0CDQ1	A0A0E0E7J3	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	FMN hydroxy acid dehydrogenase domain-containing protein.	0.910
A0A0E0CDQ1	A0A0E0ECC2	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Isocitrate lyase.	0.939
A0A0E0CDQ1	A0A0E0EEC8	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	FMN hydroxy acid dehydrogenase domain-containing protein.	0.946
A0A0E0CDQ1	A0A0E0EN49	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Aminotran_5 domain-containing protein.	0.966
A0A0E0CDQ1	A0A0E0EPZ0	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein.	0.947
A0A0E0D9Y4	A0A0E0C3S4	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein.	0.902
A0A0E0D9Y4	A0A0E0CDQ1	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.914