STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0DMD1Carboxypeptidase; Belongs to the peptidase S10 family. (528 aa)    
Predicted Functional Partners:
A0A0E0E4M1
GMC_OxRdtase_N domain-containing protein.
   
 
 0.433
A0A0E0DJ78
Uncharacterized protein; Belongs to the peptidase C1 family.
   
 0.418
A0A0E0DJW7
Uncharacterized protein; Belongs to the peptidase C1 family.
   
 0.418
A0A0E0DTN5
Uncharacterized protein; Belongs to the peptidase C1 family.
   
 0.418
A0A0E0CY76
Beta-galactosidase.
    
 0.410
A0A0E0FBN7
Beta-galactosidase.
    
 0.410
Your Current Organism:
Oryza meridionalis
NCBI taxonomy Id: 40149
Other names: Australian wild rice, IRRI 101147, O. meridionalis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.