STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0DSY8Uncharacterized protein. (107 aa)    
Predicted Functional Partners:
A0A0E0FCL5
Guanylate kinase-like domain-containing protein.
    
 
 0.894
A0A0E0C624
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.820
A0A0E0E4F5
WD_REPEATS_REGION domain-containing protein.
    
 
 0.820
A0A0E0EGB3
Homeobox domain-containing protein.
    
   0.820
A0A0E0ETQ0
DUF667 domain-containing protein.
    
   0.820
A0A0E0CA66
Mitochondrial Rho GTPase.
    
 
 0.791
A0A0E0D8L0
Uncharacterized protein.
    
 
 0.791
A0A0E0CY17
Uncharacterized protein.
    
 
 0.758
A0A0E0CYH6
Uncharacterized protein.
    
 
 0.758
A0A0E0DWD0
Uncharacterized protein.
    
 
 0.758
Your Current Organism:
Oryza meridionalis
NCBI taxonomy Id: 40149
Other names: Australian wild rice, IRRI 101147, O. meridionalis
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