STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0DTF7Cysteine proteinase inhibitor; Belongs to the cystatin family. Phytocystatin subfamily. (155 aa)    
Predicted Functional Partners:
A0A0E0CA91
Methyltransferase.
  
 
  0.608
A0A0E0DG71
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
 
 
 0.553
A0A0E0DGH5
Uncharacterized protein.
  
 
  0.553
A0A0E0DMZ2
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
 
  0.551
A0A0E0CHG4
Uncharacterized protein.
  
 
   0.545
A0A0E0CRH7
TCP domain-containing protein.
  
 
   0.544
A0A0E0CNV5
TCP domain-containing protein.
  
 
   0.540
A0A0E0DGD9
TCP domain-containing protein.
  
 
   0.540
A0A0E0EP09
Uncharacterized protein.
  
 
   0.540
A0A0E0BYH1
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
 
  0.537
Your Current Organism:
Oryza meridionalis
NCBI taxonomy Id: 40149
Other names: Australian wild rice, IRRI 101147, O. meridionalis
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