STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0EAY5F-box domain-containing protein. (728 aa)    
Predicted Functional Partners:
A0A0E0CV05
Uncharacterized protein.
   
   0.470
A0A0E0DX11
Uncharacterized protein.
    
 0.456
A0A0E0C164
Ubiquitin-like domain-containing protein.
    
  0.445
A0A0E0CYA7
Ubiquitin-like domain-containing protein.
    
  0.413
A0A0E0D3W3
Ribosomal_L2_C domain-containing protein; Belongs to the universal ribosomal protein uS19 family.
   
 
 0.413
A0A0E0DVR3
Ribosomal_L2_C domain-containing protein.
   
 
 0.413
A0A0E0EBC1
Ubiquitin-like domain-containing protein.
    
  0.413
A0A0E0ESV0
Ubiquitin-like domain-containing protein.
    
  0.413
A0A0E0ETD9
Uncharacterized protein.
    
  0.413
psbF
Cytochrome b559 subunit beta; This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. Belongs to the PsbE/PsbF family.
   
 0.410
Your Current Organism:
Oryza meridionalis
NCBI taxonomy Id: 40149
Other names: Australian wild rice, IRRI 101147, O. meridionalis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.