STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0EBN8Uncharacterized protein. (152 aa)    
Predicted Functional Partners:
A0A0E0C730
Protein kinase domain-containing protein.
    
 0.907
A0A0E0DVP6
Uncharacterized protein.
  
 0.874
A0A0E0CR32
Uncharacterized protein.
    
 0.806
A0A0E0D0K4
Nuclear pore protein.
   
 0.805
A0A0E0CMI4
MR_MLE domain-containing protein.
   
 0.785
A0A0E0D978
ETF domain-containing protein.
  
 
 0.741
A0A0E0E185
Nucleoporin_N domain-containing protein.
   
 0.741
A0A0E0DIV1
Uncharacterized protein.
 
 0.729
A0A0E0EQ92
Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 0.726
A0A0E0CLV2
Protein kinase domain-containing protein.
    
 0.721
Your Current Organism:
Oryza meridionalis
NCBI taxonomy Id: 40149
Other names: Australian wild rice, IRRI 101147, O. meridionalis
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