STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0EEB7Uncharacterized protein. (424 aa)    
Predicted Functional Partners:
A0A0E0EEC4
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.677
A0A0E0EEL9
Uncharacterized protein.
  
 
 0.644
A0A0E0CDH7
Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.
    
 0.615
A0A0E0CYG8
RRM domain-containing protein.
  
 
  0.611
A0A0E0DZV1
RRM domain-containing protein.
  
 
 0.611
A0A0E0DZW0
RRM domain-containing protein.
  
 
 0.610
A0A0E0EL73
RRM domain-containing protein.
  
 
  0.596
A0A0E0CNC6
RRM domain-containing protein.
    
 0.574
A0A0E0D0E2
MIF4G domain-containing protein.
    
 0.566
A0A0E0DYZ4
RRM domain-containing protein.
  
 0.542
Your Current Organism:
Oryza meridionalis
NCBI taxonomy Id: 40149
Other names: Australian wild rice, IRRI 101147, O. meridionalis
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