STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0EYM1Shugoshin_C domain-containing protein. (341 aa)    
Predicted Functional Partners:
A0A0E0CS18
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
    
 0.876
A0A0E0EMC1
Uncharacterized protein.
    
 0.876
A0A0E0EMC3
Uncharacterized protein.
    
 0.876
A0A0E0CJ90
Uncharacterized protein.
    
 0.722
A0A0E0CKA2
Uncharacterized protein.
    
 0.693
A0A0E0EUH9
Uncharacterized protein.
    
 0.693
A0A0E0E5B0
Uncharacterized protein.
    
  0.687
A0A0E0E025
Uncharacterized protein.
    
 0.683
A0A0E0DS32
DUF4220 domain-containing protein.
  
 
  0.654
A0A0E0DS33
DUF4220 domain-containing protein.
  
 
  0.652
Your Current Organism:
Oryza meridionalis
NCBI taxonomy Id: 40149
Other names: Australian wild rice, IRRI 101147, O. meridionalis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.