A0A0E0FD33 protein (Oryza meridionalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0E0FD33

Uncharacterized protein. (184 aa)

Predicted Functional Partners:

A0A0E0DLP0

0.867

A0A0E0EPD7

0.858

A0A0E0D073

0.829

A0A0E0D5N2

0.829

A0A0E0ELN9

0.762

A0A0E0C969

0.630

A0A0E0DFF5

0.630

A0A0E0F9E8

0.630

A0A0E0DK44

0.605

A0A0E0DMB4

0.605

Your Current Organism:

Oryza meridionalis

NCBI taxonomy Id: 40149
Other names: Australian wild rice, IRRI 101147, O. meridionalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0C969	A0A0E0D073	Uncharacterized protein.	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	0.672
A0A0E0C969	A0A0E0D5N2	Uncharacterized protein.	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	0.672
A0A0E0C969	A0A0E0DFF5	Uncharacterized protein.	Uncharacterized protein.	0.921
A0A0E0C969	A0A0E0DK44	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A0E0C969	A0A0E0DLP0	Uncharacterized protein.	RTR1-type domain-containing protein.	0.959
A0A0E0C969	A0A0E0DMB4	Uncharacterized protein.	SHS2_Rpb7-N domain-containing protein.	0.960
A0A0E0C969	A0A0E0ELN9	Uncharacterized protein.	RPOLD domain-containing protein.	0.992
A0A0E0C969	A0A0E0EPD7	Uncharacterized protein.	RPOLD domain-containing protein.	0.989
A0A0E0C969	A0A0E0F9E8	Uncharacterized protein.	Uncharacterized protein.	0.928
A0A0E0C969	A0A0E0FD33	Uncharacterized protein.	Uncharacterized protein.	0.630
A0A0E0D073	A0A0E0C969	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Uncharacterized protein.	0.672
A0A0E0D073	A0A0E0DFF5	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Uncharacterized protein.	0.672
A0A0E0D073	A0A0E0DK44	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Uncharacterized protein.	0.593
A0A0E0D073	A0A0E0DLP0	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	RTR1-type domain-containing protein.	0.882
A0A0E0D073	A0A0E0DMB4	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	SHS2_Rpb7-N domain-containing protein.	0.593
A0A0E0D073	A0A0E0ELN9	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	RPOLD domain-containing protein.	0.783
A0A0E0D073	A0A0E0EPD7	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	RPOLD domain-containing protein.	0.783
A0A0E0D073	A0A0E0F9E8	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Uncharacterized protein.	0.672
A0A0E0D073	A0A0E0FD33	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Uncharacterized protein.	0.829
A0A0E0D5N2	A0A0E0C969	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Uncharacterized protein.	0.672