A0A0E0FET4 protein (Oryza meridionalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0E0FET4

BHLH domain-containing protein. (317 aa)

Predicted Functional Partners:

A0A0E0E058

0.907

A0A0E0ET12

0.810

A0A0E0CBI5

0.802

A0A0E0DZH5

0.790

A0A0E0EWF4

0.789

A0A0E0D5L3

0.784

A0A0E0DW89

0.779

A0A0E0D7K9

0.775

A0A0E0E036

0.775

A0A0E0F276

0.775

Your Current Organism:

Oryza meridionalis

NCBI taxonomy Id: 40149
Other names: Australian wild rice, IRRI 101147, O. meridionalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0CBI5	A0A0E0D5L3	PfkB domain-containing protein; Belongs to the carbohydrate kinase PfkB family.	Uncharacterized protein.	0.759
A0A0E0CBI5	A0A0E0D7K9	PfkB domain-containing protein; Belongs to the carbohydrate kinase PfkB family.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.923
A0A0E0CBI5	A0A0E0DW89	PfkB domain-containing protein; Belongs to the carbohydrate kinase PfkB family.	TRANSKETOLASE_1 domain-containing protein.	0.617
A0A0E0CBI5	A0A0E0DZH5	PfkB domain-containing protein; Belongs to the carbohydrate kinase PfkB family.	PfkB domain-containing protein; Belongs to the carbohydrate kinase PfkB family.	0.920
A0A0E0CBI5	A0A0E0E036	PfkB domain-containing protein; Belongs to the carbohydrate kinase PfkB family.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.946
A0A0E0CBI5	A0A0E0E058	PfkB domain-containing protein; Belongs to the carbohydrate kinase PfkB family.	Uncharacterized protein.	0.891
A0A0E0CBI5	A0A0E0ET12	PfkB domain-containing protein; Belongs to the carbohydrate kinase PfkB family.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.937
A0A0E0CBI5	A0A0E0EWF4	PfkB domain-containing protein; Belongs to the carbohydrate kinase PfkB family.	Uncharacterized protein; Belongs to the phosphohexose mutase family.	0.759
A0A0E0CBI5	A0A0E0F276	PfkB domain-containing protein; Belongs to the carbohydrate kinase PfkB family.	Uncharacterized protein.	0.942
A0A0E0CBI5	A0A0E0FET4	PfkB domain-containing protein; Belongs to the carbohydrate kinase PfkB family.	BHLH domain-containing protein.	0.802
A0A0E0D5L3	A0A0E0CBI5	Uncharacterized protein.	PfkB domain-containing protein; Belongs to the carbohydrate kinase PfkB family.	0.759
A0A0E0D5L3	A0A0E0D7K9	Uncharacterized protein.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.987
A0A0E0D5L3	A0A0E0DW89	Uncharacterized protein.	TRANSKETOLASE_1 domain-containing protein.	0.963
A0A0E0D5L3	A0A0E0DZH5	Uncharacterized protein.	PfkB domain-containing protein; Belongs to the carbohydrate kinase PfkB family.	0.739
A0A0E0D5L3	A0A0E0E036	Uncharacterized protein.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.990
A0A0E0D5L3	A0A0E0E058	Uncharacterized protein.	Uncharacterized protein.	0.936
A0A0E0D5L3	A0A0E0ET12	Uncharacterized protein.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.989
A0A0E0D5L3	A0A0E0EWF4	Uncharacterized protein.	Uncharacterized protein; Belongs to the phosphohexose mutase family.	0.921
A0A0E0D5L3	A0A0E0F276	Uncharacterized protein.	Uncharacterized protein.	0.404
A0A0E0D5L3	A0A0E0FET4	Uncharacterized protein.	BHLH domain-containing protein.	0.784