STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KTR05053.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)    
Predicted Functional Partners:
KTR07152.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.892
KTR05052.1
Regulator protein of stationary/sporulation gene expression; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.802
ruvA
ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
       0.797
KTR07871.1
Prevent-host-death protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 
 0.632
ruvC
Holliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
       0.617
KTR02156.1
Prevent-host-death protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
 
 0.551
ruvB
ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
       0.535
KTR05050.1
6-aminohexanoate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.514
KTR07067.1
Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.401
Your Current Organism:
Aureimonas ureilytica
NCBI taxonomy Id: 401562
Other names: A. ureilytica, Aurantimonas ureilytica, Aurantimonas ureilytica Weon et al. 2007, Aureimonas ureilytica (Weon et al. 2007) Rathsack et al. 2011, CIP 109815, DSM 18598, KACC 11607, NBRC 106430, strain 5715S-12
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