A0A0N7LAF6 protein (Ceraceosorus bombacis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0N7LAF6

P-loop containing nucleoside triphosphate hydrolase protein. (108 aa)

Predicted Functional Partners:

A0A0P1BAI4

0.858

A0A0P1BAP1

0.835

A0A0P1BQ87

0.777

A0A0N7LAK2

0.773

A0A0P1BAI7

0.762

A0A0P1B8B1

0.761

A0A0P1B9C5

0.760

A0A0P1BJU1

0.752

A0A0P1BKY9

0.752

A0A0P1BRU2

0.752

Your Current Organism:

Ceraceosorus bombacis

NCBI taxonomy Id: 401625
Other names: ATCC 22867, C. bombacis, Dicellomyces bombacis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0N7LAF6	A0A0N7LAK2	P-loop containing nucleoside triphosphate hydrolase protein.	Predicted nucleolar protein involved in ribosome biogenesis.	0.773
A0A0N7LAF6	A0A0P1B8B1	P-loop containing nucleoside triphosphate hydrolase protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.761
A0A0N7LAF6	A0A0P1B9C5	P-loop containing nucleoside triphosphate hydrolase protein.	U3 small nucleolar RNA-associated protein 22.	0.760
A0A0N7LAF6	A0A0P1BAI4	P-loop containing nucleoside triphosphate hydrolase protein.	RhoGEF GTPase.	0.858
A0A0N7LAF6	A0A0P1BAI7	P-loop containing nucleoside triphosphate hydrolase protein.	UTP4, CIRH1A.	0.762
A0A0N7LAF6	A0A0P1BAP1	P-loop containing nucleoside triphosphate hydrolase protein.	Clathrin mu subunit; Belongs to the adaptor complexes medium subunit family.	0.835
A0A0N7LAF6	A0A0P1BJU1	P-loop containing nucleoside triphosphate hydrolase protein.	Small nucleolar ribonucleoprotein complex subunit utp14.	0.752
A0A0N7LAF6	A0A0P1BKY9	P-loop containing nucleoside triphosphate hydrolase protein.	Uncharacterized conserved protein.	0.752
A0A0N7LAF6	A0A0P1BQ87	P-loop containing nucleoside triphosphate hydrolase protein.	WD40 repeat protein.	0.777
A0A0N7LAF6	A0A0P1BRU2	P-loop containing nucleoside triphosphate hydrolase protein.	WD40-repeat-containing subunit of the 18S rRNA processing complex.	0.752
A0A0N7LAK2	A0A0N7LAF6	Predicted nucleolar protein involved in ribosome biogenesis.	P-loop containing nucleoside triphosphate hydrolase protein.	0.773
A0A0N7LAK2	A0A0P1B9C5	Predicted nucleolar protein involved in ribosome biogenesis.	U3 small nucleolar RNA-associated protein 22.	0.998
A0A0N7LAK2	A0A0P1BAI7	Predicted nucleolar protein involved in ribosome biogenesis.	UTP4, CIRH1A.	0.999
A0A0N7LAK2	A0A0P1BJU1	Predicted nucleolar protein involved in ribosome biogenesis.	Small nucleolar ribonucleoprotein complex subunit utp14.	0.972
A0A0N7LAK2	A0A0P1BKY9	Predicted nucleolar protein involved in ribosome biogenesis.	Uncharacterized conserved protein.	0.972
A0A0N7LAK2	A0A0P1BQ87	Predicted nucleolar protein involved in ribosome biogenesis.	WD40 repeat protein.	0.997
A0A0N7LAK2	A0A0P1BRU2	Predicted nucleolar protein involved in ribosome biogenesis.	WD40-repeat-containing subunit of the 18S rRNA processing complex.	0.998
A0A0P1B8B1	A0A0N7LAF6	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	P-loop containing nucleoside triphosphate hydrolase protein.	0.761
A0A0P1B8B1	A0A0P1BAI4	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	RhoGEF GTPase.	0.996
A0A0P1B8B1	A0A0P1BAP1	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Clathrin mu subunit; Belongs to the adaptor complexes medium subunit family.	0.999