STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0N7LBI4Cutinase. (577 aa)    
Predicted Functional Partners:
A0A0P1BB87
DNA polymerase delta, regulatory subunit 55.
    
 0.705
A0A0P1BQP2
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.676
A0A0P1BM74
DNA polymerase.
   
 0.672
A0A0P1BFF8
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.663
A0A0P1B9U6
Small nuclear ribonucleo protein.
    
  0.660
A0A0P1BN99
Small nuclear ribonucleoprotein Sm D2.
    
 0.658
A0A0P1B815
MUS81.
    
 0.656
A0A0P1BDF0
Nucleosome remodeling subunit caf1 nurf55 msi1.
    
  0.618
A0A0P1BM53
Small nuclear ribonucleoprotein Sm D3.
    
 0.603
A0A0P1BN75
VACUOLAR MEMBRANE PROTEIN YPL162C.
    
 0.588
Your Current Organism:
Ceraceosorus bombacis
NCBI taxonomy Id: 401625
Other names: ATCC 22867, C. bombacis, Dicellomyces bombacis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.