A0A0P1B8U3 protein (Ceraceosorus bombacis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0P1B8U3

Nonsense-mediated decay protein Upf3. (584 aa)

Predicted Functional Partners:

A0A0P1BAD4

0.995

A0A0P1BLI4

0.987

A0A0P1BNZ3

0.982

A0A0P1BPB8

0.982

A0A0P1BPM7

0.982

A0A0P1B9K6

0.979

A0A0P1B8N6

0.974

A0A0P1BID4

0.974

A0A0P1BDC1

0.965

A0A0P1BN44

0.952

Your Current Organism:

Ceraceosorus bombacis

NCBI taxonomy Id: 401625
Other names: ATCC 22867, C. bombacis, Dicellomyces bombacis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0P1B8N6	A0A0P1B8U3	Rna-binding domain-containing protein.	Nonsense-mediated decay protein Upf3.	0.974
A0A0P1B8N6	A0A0P1B9K6	Rna-binding domain-containing protein.	Splicing coactivator SRm160/300, subunit SRm160 (Contains PWI domain).	0.825
A0A0P1B8N6	A0A0P1BAD4	Rna-binding domain-containing protein.	Nonsense-mediated mRNA decay 2 protein.	0.987
A0A0P1B8N6	A0A0P1BDC1	Rna-binding domain-containing protein.	RNA helicase nonsense mRNA reducing factor (PNORF1).	0.881
A0A0P1B8N6	A0A0P1BID4	Rna-binding domain-containing protein.	Mago nashi domain protein.	0.999
A0A0P1B8N6	A0A0P1BLI4	Rna-binding domain-containing protein.	Atp dependent helicase.	0.881
A0A0P1B8N6	A0A0P1BN44	Rna-binding domain-containing protein.	Nonsense-mediated mRNA decay protein.	0.848
A0A0P1B8N6	A0A0P1BNZ3	Rna-binding domain-containing protein.	FOG: RRM domain.	0.985
A0A0P1B8N6	A0A0P1BPB8	Rna-binding domain-containing protein.	Rna annealing factor.	0.942
A0A0P1B8N6	A0A0P1BPM7	Rna-binding domain-containing protein.	Atp-dependent rna helicase fal1.	0.999
A0A0P1B8U3	A0A0P1B8N6	Nonsense-mediated decay protein Upf3.	Rna-binding domain-containing protein.	0.974
A0A0P1B8U3	A0A0P1B9K6	Nonsense-mediated decay protein Upf3.	Splicing coactivator SRm160/300, subunit SRm160 (Contains PWI domain).	0.979
A0A0P1B8U3	A0A0P1BAD4	Nonsense-mediated decay protein Upf3.	Nonsense-mediated mRNA decay 2 protein.	0.995
A0A0P1B8U3	A0A0P1BDC1	Nonsense-mediated decay protein Upf3.	RNA helicase nonsense mRNA reducing factor (PNORF1).	0.965
A0A0P1B8U3	A0A0P1BID4	Nonsense-mediated decay protein Upf3.	Mago nashi domain protein.	0.974
A0A0P1B8U3	A0A0P1BLI4	Nonsense-mediated decay protein Upf3.	Atp dependent helicase.	0.987
A0A0P1B8U3	A0A0P1BN44	Nonsense-mediated decay protein Upf3.	Nonsense-mediated mRNA decay protein.	0.952
A0A0P1B8U3	A0A0P1BNZ3	Nonsense-mediated decay protein Upf3.	FOG: RRM domain.	0.982
A0A0P1B8U3	A0A0P1BPB8	Nonsense-mediated decay protein Upf3.	Rna annealing factor.	0.982
A0A0P1B8U3	A0A0P1BPM7	Nonsense-mediated decay protein Upf3.	Atp-dependent rna helicase fal1.	0.982