A0A0P1B8X4 protein (Ceraceosorus bombacis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0P1B8X4

Ada DNA repair, metal-binding. (747 aa)

Predicted Functional Partners:

A0A0P1B9G7

0.753

A0A0P1B743

0.743

A0A0P1BNS8

0.743

A0A0P1BKN5

0.697

A0A0P1BED1

0.693

A0A0P1BSV4

0.679

A0A0P1BRG1

0.673

A0A0N7L9K9

0.643

A0A0P1BMH9

0.643

A0A0P1B8P2

0.630

Your Current Organism:

Ceraceosorus bombacis

NCBI taxonomy Id: 401625
Other names: ATCC 22867, C. bombacis, Dicellomyces bombacis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0N7L9K9	A0A0P1B8P2	BTB domain-containing protein.	Uncharacterized protein.	0.614
A0A0N7L9K9	A0A0P1B8X4	BTB domain-containing protein.	Ada DNA repair, metal-binding.	0.643
A0A0N7L9K9	A0A0P1B9G7	BTB domain-containing protein.	Transcription factor, Myb superfamily.	0.777
A0A0N7L9K9	A0A0P1BED1	BTB domain-containing protein.	annotation not available	0.961
A0A0N7L9K9	A0A0P1BKN5	BTB domain-containing protein.	Cyclin-like protein.	0.970
A0A0N7L9K9	A0A0P1BRG1	BTB domain-containing protein.	Basic-leucine zipper domain.	0.502
A0A0N7L9K9	A0A0P1BSV4	BTB domain-containing protein.	Transcription initiation factor IIE, alpha subunit.	0.967
A0A0P1B743	A0A0P1B8X4	HMG-box transcription factor.	Ada DNA repair, metal-binding.	0.743
A0A0P1B8P2	A0A0N7L9K9	Uncharacterized protein.	BTB domain-containing protein.	0.614
A0A0P1B8P2	A0A0P1B8X4	Uncharacterized protein.	Ada DNA repair, metal-binding.	0.630
A0A0P1B8P2	A0A0P1BED1	Uncharacterized protein.	annotation not available	0.527
A0A0P1B8P2	A0A0P1BKN5	Uncharacterized protein.	Cyclin-like protein.	0.511
A0A0P1B8P2	A0A0P1BMH9	Uncharacterized protein.	Transcription initiation factor tfiid-1.	0.614
A0A0P1B8P2	A0A0P1BRG1	Uncharacterized protein.	Basic-leucine zipper domain.	0.750
A0A0P1B8X4	A0A0N7L9K9	Ada DNA repair, metal-binding.	BTB domain-containing protein.	0.643
A0A0P1B8X4	A0A0P1B743	Ada DNA repair, metal-binding.	HMG-box transcription factor.	0.743
A0A0P1B8X4	A0A0P1B8P2	Ada DNA repair, metal-binding.	Uncharacterized protein.	0.630
A0A0P1B8X4	A0A0P1B9G7	Ada DNA repair, metal-binding.	Transcription factor, Myb superfamily.	0.753
A0A0P1B8X4	A0A0P1BED1	Ada DNA repair, metal-binding.	annotation not available	0.693
A0A0P1B8X4	A0A0P1BKN5	Ada DNA repair, metal-binding.	Cyclin-like protein.	0.697