A0A0P1BB43 protein (Ceraceosorus bombacis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0P1BB43

Uncharacterized conserved protein. (617 aa)

Predicted Functional Partners:

A0A0N7LB27

0.999

A0A0P1BIB1

0.999

A0A0P1BR91

0.999

A0A0P1BNW9

0.998

A0A0P1BFN1

0.988

A0A0P1BF81

0.950

A0A0P1BBK0

0.948

A0A0P1B9G9

0.942

A0A0P1BHE6

0.925

A0A0P1BE16

0.919

Your Current Organism:

Ceraceosorus bombacis

NCBI taxonomy Id: 401625
Other names: ATCC 22867, C. bombacis, Dicellomyces bombacis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0N7LB27	A0A0P1B9G9	Putative RNA polymerase II regulator.	Transcription elongation factor SPT6.	0.902
A0A0N7LB27	A0A0P1BB43	Putative RNA polymerase II regulator.	Uncharacterized conserved protein.	0.999
A0A0N7LB27	A0A0P1BBK0	Putative RNA polymerase II regulator.	Histone H2B; Belongs to the histone H2B family.	0.947
A0A0N7LB27	A0A0P1BE16	Putative RNA polymerase II regulator.	Uncharacterized conserved protein.	0.639
A0A0N7LB27	A0A0P1BF81	Putative RNA polymerase II regulator.	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.929
A0A0N7LB27	A0A0P1BFN1	Putative RNA polymerase II regulator.	Fact complex subunit spt16.	0.985
A0A0N7LB27	A0A0P1BHE6	Putative RNA polymerase II regulator.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.911
A0A0N7LB27	A0A0P1BIB1	Putative RNA polymerase II regulator.	TPR-containing nuclear phosphoprotein that regulates K( ) uptake.	0.999
A0A0N7LB27	A0A0P1BNW9	Putative RNA polymerase II regulator.	Paf1/RNA polymerase II complex, RTF1 component (Involved in regulation of TATA box-binding protein).	0.997
A0A0N7LB27	A0A0P1BR91	Putative RNA polymerase II regulator.	RNA polymerase II assessory factor Cdc73p.	0.999
A0A0P1B9G9	A0A0N7LB27	Transcription elongation factor SPT6.	Putative RNA polymerase II regulator.	0.902
A0A0P1B9G9	A0A0P1BB43	Transcription elongation factor SPT6.	Uncharacterized conserved protein.	0.942
A0A0P1B9G9	A0A0P1BBK0	Transcription elongation factor SPT6.	Histone H2B; Belongs to the histone H2B family.	0.926
A0A0P1B9G9	A0A0P1BE16	Transcription elongation factor SPT6.	Uncharacterized conserved protein.	0.999
A0A0P1B9G9	A0A0P1BF81	Transcription elongation factor SPT6.	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.967
A0A0P1B9G9	A0A0P1BFN1	Transcription elongation factor SPT6.	Fact complex subunit spt16.	0.986
A0A0P1B9G9	A0A0P1BHE6	Transcription elongation factor SPT6.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.945
A0A0P1B9G9	A0A0P1BIB1	Transcription elongation factor SPT6.	TPR-containing nuclear phosphoprotein that regulates K( ) uptake.	0.962
A0A0P1B9G9	A0A0P1BNW9	Transcription elongation factor SPT6.	Paf1/RNA polymerase II complex, RTF1 component (Involved in regulation of TATA box-binding protein).	0.939
A0A0P1B9G9	A0A0P1BR91	Transcription elongation factor SPT6.	RNA polymerase II assessory factor Cdc73p.	0.944