STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P1BCA9Uncharacterized protein. (444 aa)    
Predicted Functional Partners:
A0A0P1BTC0
Pre-mrna splicing factor.
    
 0.870
A0A0P1BG97
RNA helicase.
    
 0.837
A0A0P1B9C5
U3 small nucleolar RNA-associated protein 22.
    
 
 0.778
A0A0P1BCR6
PROTEIN TMA23.
    
 
 0.778
A0A0N7L9D0
Uncharacterized conserved protein.
   
   0.776
A0A0P1BDX8
HAT (Half-A-TPR) repeat-containing protein.
    
 
 0.776
A0A0N7L8U3
U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.
    
   0.775
A0A0P1B8S3
Ribosomal rna assembly protein mis3.
    
   0.775
A0A0P1BAC2
Cell adhesion complex protein bystin.
    
   0.775
A0A0P1BBD8
Nucleolar protein involved in 40S ribosome biogenesis.
    
   0.775
Your Current Organism:
Ceraceosorus bombacis
NCBI taxonomy Id: 401625
Other names: ATCC 22867, C. bombacis, Dicellomyces bombacis
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