STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P1BDC1RNA helicase nonsense mRNA reducing factor (PNORF1). (890 aa)    
Predicted Functional Partners:
A0A0P1BAD4
Nonsense-mediated mRNA decay 2 protein.
   
 0.967
A0A0P1B8U3
Nonsense-mediated decay protein Upf3.
    
 0.965
A0A0P1BNZ3
FOG: RRM domain.
    
 0.910
A0A0P1B8N6
Rna-binding domain-containing protein.
    
 0.881
A0A0P1BN44
Nonsense-mediated mRNA decay protein.
    
 0.875
A0A0P1BDH8
Eukaryotic polypeptide chain release factor 3.
    
 0.866
A0A0P1B8V6
Decapping enzyme complex component DCP1.
    
 0.848
A0A0N7L941
Nonsense-mediated mRNA decay protein.
    
 0.833
A0A0P1BT72
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 0.818
A0A0P1BC41
Nuclear cap-binding protein subunit 2.
    
 0.815
Your Current Organism:
Ceraceosorus bombacis
NCBI taxonomy Id: 401625
Other names: ATCC 22867, C. bombacis, Dicellomyces bombacis
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