STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P1BF56Atp-dependent rna helicase; Belongs to the DEAD box helicase family. (402 aa)    
Predicted Functional Partners:
A0A0P1BFY5
Disrupter of silencing SAS10.
   
 0.990
A0A0P1BD09
DEAH-box RNA helicase.
   
 0.988
A0A0P1B9C5
U3 small nucleolar RNA-associated protein 22.
   
 0.981
A0A0P1BGQ3
TBP-binding protein, activator of basal transcription (Contains rrm motif).
   
 
 0.980
A0A0P1BRU2
WD40-repeat-containing subunit of the 18S rRNA processing complex.
   
 0.949
A0A0P1BAC2
Cell adhesion complex protein bystin.
   
 
 0.945
A0A0P1B8G5
Protein involved in rRNA processing.
   
 0.934
SPB1
AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
   
 0.929
A0A0N7L8U3
U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.
   
 
 0.922
A0A0N7L970
Probable rok1-atp-dependent rna helicase; Belongs to the DEAD box helicase family.
  
0.922
Your Current Organism:
Ceraceosorus bombacis
NCBI taxonomy Id: 401625
Other names: ATCC 22867, C. bombacis, Dicellomyces bombacis
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