STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P1BF82Structure-specific endonuclease subunit Slx4. (477 aa)    
Predicted Functional Partners:
SLX1
Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA.
   
 0.944
A0A0P1B815
MUS81.
   
 0.907
A0A0P1BE54
Prolyl-trna synthetase.
  
 0.893
A0A0P1BF55
Glutamyl-tRNA amidotransferase subunit B.
  
 0.893
A0A0P1BTX9
Dna repair protein rad10.
   
 0.828
A0A0P1BEU2
Leucyl-trna synthetase.
  
 0.793
A0A0P1BRV9
Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the amidase family. GatA subfamily.
   
 0.781
A0A0P1BAK2
Isoleucine-trna ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.776
A0A0N7L9T5
Glutamyl-trna synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.765
A0A0P1BD43
Prolyl-tRNA synthetase.
  
 0.755
Your Current Organism:
Ceraceosorus bombacis
NCBI taxonomy Id: 401625
Other names: ATCC 22867, C. bombacis, Dicellomyces bombacis
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