STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P1BH90Pre-mrna-splicing atp-dependent rna helicase prp28; Belongs to the DEAD box helicase family. (741 aa)    
Predicted Functional Partners:
A0A0P1BAW8
Probable pre-mrna splicing factor prp1.
   
 0.991
A0A0P1BIC1
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.990
A0A0P1BL77
Sec63-domain-containing protein.
   
 0.984
A0A0P1B9J9
U5 snRNP-specific protein-like factor and related proteins.
    
 0.979
A0A0P1BFF8
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.978
A0A0P1BN99
Small nuclear ribonucleoprotein Sm D2.
    
 0.977
A0A0P1B9Z4
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
 
  
 0.975
A0A0P1BBM3
Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.
    
 0.974
A0A0P1BJ22
U4/U6.U5 snRNP associated protein.
   
 0.969
A0A0P1BM53
Small nuclear ribonucleoprotein Sm D3.
   
 0.969
Your Current Organism:
Ceraceosorus bombacis
NCBI taxonomy Id: 401625
Other names: ATCC 22867, C. bombacis, Dicellomyces bombacis
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